將去識別化作業中繼資料寫入 FHIR 儲存庫

本頁說明如何將 DICOM 資料去識別化,並將有關去識別化作業的相關中繼資料,以及已將哪些內容去識別化,寫入 FHIR 儲存庫。中繼資料會儲存在 FHIR 儲存庫中的 FHIR Provenance 資源中。接著,您可以使用 FHIR 自訂搜尋查詢資料,回答下列問題:

  • 哪些資訊已去識別化?
  • 資料去識別化的方式和原因為何?
  • 去識別化作業發生的時間和所需時間為何?

事前準備

使用 FHIR 取代註解

Cloud Healthcare API 提供註解 API,可用來註解去識別化資料

將去識別化作業中繼資料寫入 FHIR 儲存庫的運作方式類似,且具有下列優點:

  • 您不需要使用註解 API,這是另一個 API。
  • 您不需要建立及管理註解儲存庫和註解記錄。
  • 您可以繼續使用 FHIR 標準和 Cloud Healthcare API FHIR API。
  • 您可以將 FHIR 資源匯出至 BigQuery,進行探索和分析。產生的資料僅與 LOSSLESSANALYTICS_V2 SchemaType 相容。
  • 我們會提供更多關於去識別化作業中繼資料的資訊。

需求條件

儲存去識別作業中繼資料的 FHIR 儲存庫必須符合下列規定:

  • 必須已存在。
  • 必須是 R4 版本的 FHIR 儲存庫。
  • 必須將 enableUpdateCreate 設為 true

作業中繼資料 FHIR 存放區中的來源資源

執行 DICOM 去識別化作業時,系統會將下列來源資源寫入作業中繼資料 FHIR 儲存庫:

  • 摘要列出去識別化作業的來源資源,例如長時間執行作業的名稱、作業發生的時間,以及使用的設定。如需此來源資源的欄位清單,請參閱「在來源資源中去識別作業中繼資料」。

  • 每個已去識別的 DICOM 例項的來源資源。如要查看這個來源資源中的欄位清單,請參閱「來源資源中的 DICOM 去識別化中繼資料」。

    • 這項資源包含去識別化資訊,例如 DICOM 標記或 DICOM 影像的部分,以及所採取的動作,例如資訊是否已刪除、轉換或忽略。
    • 資源可能包含經由光學字元辨識 (OCR) 處理的去識別化資料,且該資料屬於受保護的健康資訊 (PHI) 範圍。

      去識別化文字 (quote) 會隨附資訊類型 (infoType) 和資訊找到的可能性 (confidence)。舉例來說,如果 DICOM 影像包含已燒入的文字 John Doe,且已完成去識別化,Provenance 資源就會包含 quote 設為 John DoeinfoType 設為 PERSON_NAME,以及介於 0 和 1 之間的 confidence 值。

      只有在呼叫 dicomStores.deidentify 方法時,將 ImageConfig.textRedactionMode 設為 REDACT_SENSITIVE_TEXTREDACT_SENSITIVE_TEXT_CLEAN_DESCRIPTORS,才會產生 DICOM 去識別化中繼資料。如果您設定 REDACT_ALL_TEXT,方法會在 extracted-text 欄位中產生去識別化文字,做為單一字串。字串不含分割符號。符記之間以空格分隔。

在來源資源中將作業中繼資料去識別化

下表說明去識別化作業中的中繼資料,以及中繼資料中可在來源資源中找到的對應欄位。「來源資源欄位」儲存格包含示範用途的值範例。

中繼資料說明 來源資源欄位
來源資源 ID Provenance.id
去識別化作業開始的時間 Provenance.occurredDateTime
來源資源建立時間戳記 Provenance.recorded
去識別化長時間執行作業的名稱
    Provenance.agent.who: {
      "identifier": {
        "system": "https://g.co/healthcare/operation"
        "value": "projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID"
      }
    }
    
來源 DICOM 儲存庫
    Provenance.entity.role: "SOURCE"
    Provenance.entity.what.identifier.value: "projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/dicomStores/SOURCE_DICOM_STORE_ID"
    
目的地 DICOM 儲存庫 Provenance.target.type.value
使用的 DeidentifyConfig
    Provenance.entity.extension: [{
      url: 'https://g.co/deidentify-config',
      valueString: 'DEIDENTIFY_CONFIG' // Can be either a JSON configuration or a path to a Cloud Storage URI and timestamp if the configuration was provided using Cloud Storage
    }]
    

Provenance 資源中的 DICOM 去識別化中繼資料

下表說明 DICOM 例項中已去識別化中繼資料,以及中繼資料在來源資源中的對應欄位。「來源資源欄位」儲存格包含示範用途的值範例。

中繼資料說明 來源資源欄位
去識別作業資源的連結 Provenance.agent.who: {reference: "Provenance/PROVENANCE_RESOURCE_ID"}
來源資源建立時間戳記 Provenance.recorded
來源 DICOM 執行個體 REST 路徑
    Provenance.entity.role: SOURCE
    Provenance.entity.what.identifier.value
    
目標 DICOM 執行個體 REST 路徑 Provenance.target.type.value
DICOM 圖片大小
    Provenance.entity.extension: [
      {
        url: 'https://g.co/WIDTH',
        valueDecimal: WIDTH
      },
        url: 'https://g.co/HEIGHT',
        valueDecimal: HEIGHT
      }
    ]
    
結構化大小
    Provenance.entity.extension: [{
      url: 'https://g.co/DICOM_STRUCTURED_SIZE',
      valueDecimal: VALUE,
    }]
    
DICOM 圖像註解
    Provenance.entity.extension: [{
      url: 'https://g.co/DICOM_IMAGES',
      extension: [
        { FRAME_0
        },
        { FRAME_1
        },
        ...
      ]
    }]
    
DICOM 影格註解
    Provenance.entity.extension['https://g.co/dicom-images'].extension: [
      {
        url: 'frame-index',
        valueDecimal: 0,
        extension: [
          {
            url: 'left',
            valueDecimal: LEFT_VALUE
          },
          {
            url: 'right',
            valueDecimal: RIGHT_VALUE
          },
          {
            url: 'top',
            valueDecimal: TOP_VALUE
          },
          {
            url: 'bottom',
            valueDecimal: BOTTOM_VALUE
          },
          {
            url: 'relative-left',
            valueDecimal: RELATIVE_LEFT_VALUE / WIDTH
          },
          {
            url: 'relative-right',
            valueDecimal: RELATIVE_RIGHT_VALUE / HEIGHT
          },
          {
            url: 'relative-top',
            valueDecimal: RELATIVE_TOP_VALUE / WIDTH
          },
          {
            url: 'relative-bottom',
            valueDecimal: RELATIVE_BOTTOM / HEIGHT
          }
        ]
      }
    ]
    
DICOM 影格註解
    // Only available if the text redaction mode is REDACT_SENSITIVE_TEXT or
    // REDACT_SENSITIVE_TEXT_CLEAN_DESCRIPTORS
    Provenance.entity.extension: [
       {
        "url": "quote", // The PHI text de-identified
        "valueString": "John Doe"
       },
      {
        "url": "infoType", // The type of the de-identified text
        "valueString": "PERSON_NAME"
       },
      {
        "url": "confidence", // The likelihood of finding this quote and its infoType
        "valueDecimal": 0.7
       }
    ]
    
DICOM 影格註解
    // Only available if the text redaction mode is REDACT_ALL_TEXT
    Provenance.entity.extension: [
       {
        "url": "extracted-text", // The entire PHI text de-identified
        "valueString": "John Doe 27-Jan-1999 Sex:M"
       }
    ]
    
所有 DICOM 標記註解
    Provenance.entity.extension: [{
      url: 'https://g.co/dicom-tags',
      extension: [
        { // tag (0002,0000)
        },
        { // tag (0002,0001)
        },
        ...
      ]
    }]
    
DICOM 個別標記符號
    Provenance.entity.extension['https://g.co/dicom-tags'].extension: [
      {
        url: 'tag-id',
        valueString: '00080012',
        extension: [
          {
            url: 'byte-start',
            valueDecimal: 10
          },
          {
            url: 'byte-end',
            valueDecimal: 18
          },
          {
            url: 'finding-infotype',
            valueString: 'PERSON_NAME'
          },
          {
            url: 'text-original',
            valueString: 'John Doe'
          },
          {
            url: 'text-replaced',
            valueString: 'PERSON_NAME'
          },
          {
            url: 'deidentify-action',
            valueString: 'REMOVED'
            // Possible values are "REMOVED", "DELETED", "REGENERATED UID",
            // "RESET", "CLEANED", and "RECURSED"
          },
          {
            url: 'deidentify-reason',
            valueString: 'Matched VALUE'
            // Possible values include "ID", "VR", or "Expression",
            // for example "Matched ID: DICOM_TAG_ID"
          }
        ]
      }
    ]
    

範例

事前準備

請務必先在 FHIR 中繼資料作業上取得 roles/healthcare.fhirResourceEditor 角色,再執行下列任何範例。您需要這個角色才能寫入作業中繼資料 FHIR 存放區。

將 DICOM 資料去識別化、寫入 FHIR 存放區,以及搜尋來源資源

在執行這個範例之前,請先完成下列步驟:

  1. 建立包含 DICOM 儲存庫來源資料集,其中至少包含一個要去識別化的 DICOM 例項。
  2. 建立目的地資料集,其中包含空白 DICOM 儲存庫和空白 FHIR 儲存庫。FHIR 存放區必須符合相關規定

這個範例會擴充結合標記去識別化和燒入文字遮蓋功能。在這個範例中,去識別化作業會在單一 DICOM 儲存庫上執行,並將去識別化資料寫入新的 DICOM 儲存庫。作業中繼資料 FHIR 儲存庫與新 DICOM 儲存庫位於相同資料集中。

本範例使用兩個 DICOM 例項。我們不會提供這些例項,因此範例回覆可能與去識別化資料不完全相符。

  1. 將 DICOM 資料去識別化。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:包含來源 DICOM 儲存庫的資料集位置
    • SOURCE_DATASET_ID:來源 DICOM 儲存庫的父資料集
    • SOURCE_DICOM_STORE_ID:DICOM 儲存庫的 ID,其中包含您要去識別化的資料
    • DESTINATION_DATASET_ID:包含中繼資料操作 FHIR 儲存庫的現有資料集,以及將建立去識別化 DICOM 儲存庫的位置
    • DESTINATION_DICOM_STORE_ID:DICOM 儲存庫,用於寫入來源 DICOM 儲存庫的去識別化資料
    • OPERATION_METADATA_FHIR_STORE_ID:要寫入去識別化作業中繼資料的 FHIR 儲存庫

    JSON 要求主體:

    {
      "destinationStore": "projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/dicomStores/DESTINATION_DICOM_STORE_ID",
      "config": {
        "dicom": {
          "filterProfile": "DEIDENTIFY_TAG_CONTENTS"
        },
        "image": {
          "textRedactionMode": "REDACT_ALL_TEXT"
        },
        "operationMetadata": {
          "fhirOutput": {
            "fhirStore": "projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE"
          }
        }
      }
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "destinationStore": "projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/dicomStores/DESTINATION_DICOM_STORE_ID",
      "config": {
        "dicom": {
          "filterProfile": "DEIDENTIFY_TAG_CONTENTS"
        },
        "image": {
          "textRedactionMode": "REDACT_ALL_TEXT"
        },
        "operationMetadata": {
          "fhirOutput": {
            "fhirStore": "projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE"
          }
        }
      }
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/json; charset=utf-8" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/SOURCE_DATASET_ID/dicomStores/SOURCE_DICOM_STORE_ID:deidentify"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "destinationStore": "projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/dicomStores/DESTINATION_DICOM_STORE_ID",
      "config": {
        "dicom": {
          "filterProfile": "DEIDENTIFY_TAG_CONTENTS"
        },
        "image": {
          "textRedactionMode": "REDACT_ALL_TEXT"
        },
        "operationMetadata": {
          "fhirOutput": {
            "fhirStore": "projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE"
          }
        }
      }
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/json; charset=utf-8" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/SOURCE_DATASET_ID/dicomStores/SOURCE_DICOM_STORE_ID:deidentify" | Select-Object -Expand Content
    回應如下:回應會包含長時間執行作業的 ID。如果方法呼叫可能需要大量時間才能完成,系統就會傳回長時間執行的作業。請記下 OPERATION_ID 的值。您需要在下一個步驟中使用這個值。

  2. 取得作業狀態。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:資料集的位置
    • SOURCE_DATASET_ID:執行去識別化作業的資料集
    • OPERATION_ID:去識別化作業的 ID

    如要傳送要求,請選擇以下其中一個選項:

    curl

    執行下列指令:

    curl -X GET \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID"

    PowerShell

    執行下列指令:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method GET `
    -Headers $headers `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID" | Select-Object -Expand Content

    APIs Explorer

    開啟方法參考頁面。系統會在頁面右側開啟 API Explorer 面板。 您可以使用這項工具來傳送要求。完成所有必填欄位,然後按一下「執行」

    您應該會收到如下的 JSON 回應:

  3. 成功將 DICOM 資料去識別化,並將作業中繼資料寫入 FHIR 存放區後,您就可以在 FHIR 存放區中查看來源資源。

    如要查看來源資源,請使用 fhir.search 方法。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    如要傳送要求,請選擇以下其中一個選項:

    curl

    執行下列指令:

    curl -X GET \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance"

    PowerShell

    執行下列指令:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method GET `
    -Headers $headers `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DESTINATION_DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance" | Select-Object -Expand Content
    以下回應是去識別兩個 DICOM 例項的結果。去識別化作業會導致下列三個來源資源建立:
    • 每個 DICOM 執行個體各有一個來源資源
    • 去識別化作業的一個來源資源

儲存範例資料、建立相對 x 座標自訂 FHIR 搜尋作業,以及查詢

執行這個範例之前,請建立目的地資料集,其中包含空白 DICOM 儲存庫和空白 FHIR 儲存庫。FHIR 存放區必須符合相關規定

以下範例說明如何儲存在「去識別 DICOM 資料、寫入 FHIR 儲存庫,以及搜尋來源資源」中建立的三個來源資源,然後建立自訂搜尋。自訂搜尋會在其中一個去識別化 DICOM 例項中查詢 relative-x-coordinate-bottom-left

  1. 儲存來源資訊資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    JSON 要求主體:

    {
      "resourceType": "Bundle",
      "type": "transaction",
      "entry": [
        {
          "request": {"method": "PUT", "url": "Provenance/operation-123"},
          "resource": {
            "resourceType": "Provenance",
            "id": "operation-123",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store"
                }
              }
            ],
            "occurredDateTime": "2010-11-08T08:30:00-04:00",
            "recorded": "2010-11-08T08:30:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "system": "https://g.co/healthcare/operation",
                    "value": "projects/my-project/locations/us-central1/datasets/my-dataset/operations/123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store"
                  }
                }
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0,
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00100021",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00102150",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:25-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1,
                        "extension": [
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00101010",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00100020",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        }
      ]
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "resourceType": "Bundle",
      "type": "transaction",
      "entry": [
        {
          "request": {"method": "PUT", "url": "Provenance/operation-123"},
          "resource": {
            "resourceType": "Provenance",
            "id": "operation-123",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store"
                }
              }
            ],
            "occurredDateTime": "2010-11-08T08:30:00-04:00",
            "recorded": "2010-11-08T08:30:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "system": "https://g.co/healthcare/operation",
                    "value": "projects/my-project/locations/us-central1/datasets/my-dataset/operations/123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store"
                  }
                }
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0,
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00100021",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00102150",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:25-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1,
                        "extension": [
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00101010",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00100020",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        }
      ]
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/fhir+json" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "resourceType": "Bundle",
      "type": "transaction",
      "entry": [
        {
          "request": {"method": "PUT", "url": "Provenance/operation-123"},
          "resource": {
            "resourceType": "Provenance",
            "id": "operation-123",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store"
                }
              }
            ],
            "occurredDateTime": "2010-11-08T08:30:00-04:00",
            "recorded": "2010-11-08T08:30:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "system": "https://g.co/healthcare/operation",
                    "value": "projects/my-project/locations/us-central1/datasets/my-dataset/operations/123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store"
                  }
                }
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0,
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00100021",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00102150",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:25-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1,
                        "extension": [
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00101010",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00100020",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        }
      ]
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/fhir+json" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir" | Select-Object -Expand Content

    您應該會收到如下的 JSON 回應:

  2. 在 DICOM 圖片的相對 X 座標上建立 SearchParameter 資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    JSON 要求主體:

    {
      "resourceType": "SearchParameter",
      "url": "relative-x-coordinate-bottom-left",
      "base": ["Provenance"],
      "code": "relative-x-coordinate-bottom-left",
      "name": "relative x-coordinate of the bottom left corner of the bounding box",
      "type": "number",
      "expression": "Provenance.entity.extension('https://g.co/dicom-images').extension('frame-index').extension('relative-bottom').value.as(Decimal)",
      "status": "active",
      "description": "A search on bottom left relative x-coordinate of annotations generated from de-identification of a DICOM file"
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "resourceType": "SearchParameter",
      "url": "relative-x-coordinate-bottom-left",
      "base": ["Provenance"],
      "code": "relative-x-coordinate-bottom-left",
      "name": "relative x-coordinate of the bottom left corner of the bounding box",
      "type": "number",
      "expression": "Provenance.entity.extension('https://g.co/dicom-images').extension('frame-index').extension('relative-bottom').value.as(Decimal)",
      "status": "active",
      "description": "A search on bottom left relative x-coordinate of annotations generated from de-identification of a DICOM file"
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/fhir+json" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/SearchParameter"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "resourceType": "SearchParameter",
      "url": "relative-x-coordinate-bottom-left",
      "base": ["Provenance"],
      "code": "relative-x-coordinate-bottom-left",
      "name": "relative x-coordinate of the bottom left corner of the bounding box",
      "type": "number",
      "expression": "Provenance.entity.extension('https://g.co/dicom-images').extension('frame-index').extension('relative-bottom').value.as(Decimal)",
      "status": "active",
      "description": "A search on bottom left relative x-coordinate of annotations generated from de-identification of a DICOM file"
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/fhir+json" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/SearchParameter" | Select-Object -Expand Content

    您應該會收到如下的 JSON 回應:

  3. 在 FHIR 儲存庫中啟用自訂 SearchParameter 資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    JSON 要求主體:

    {
      "canonicalUrls": [
        "relative-x-coordinate-bottom-left"
      ]
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "canonicalUrls": [
        "relative-x-coordinate-bottom-left"
      ]
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/fhir+json" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID:configureSearch"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "canonicalUrls": [
        "relative-x-coordinate-bottom-left"
      ]
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/fhir+json" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID:configureSearch" | Select-Object -Expand Content
    回應如下:回應會包含長時間執行作業的 ID。如果方法呼叫可能需要大量時間才能完成,系統就會傳回長時間執行的作業。請記下 OPERATION_ID 的值。您需要在下一個步驟中使用這個值。

  4. 取得作業狀態。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:資料集的位置
    • DATASET_ID:自訂搜尋作業執行的資料集
    • OPERATION_ID:自訂搜尋作業的 ID

    如要傳送要求,請選擇以下其中一個選項:

    curl

    執行下列指令:

    curl -X GET \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID"

    PowerShell

    執行下列指令:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method GET `
    -Headers $headers `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID" | Select-Object -Expand Content

    APIs Explorer

    開啟方法參考頁面。系統會在頁面右側開啟 API Explorer 面板。 您可以使用這項工具來傳送要求。完成所有必填欄位,然後按一下「執行」

    您應該會收到如下的 JSON 回應:

  5. 使用相對 x 座標搜尋參數查詢來源資源:

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    如要傳送要求,請選擇以下其中一個選項:

    curl


    以下範例使用 relative-x-coordinate-bottom-left=le0.05 查詢,搜尋圖片邊緣 5% 範圍內的 x 座標。

    執行下列指令:

    curl -X GET \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance?relative-x-coordinate-bottom-left=le0.05"

    PowerShell


    以下範例使用 relative-x-coordinate-bottom-left=le0.05 查詢,搜尋圖片邊緣 5% 範圍內的 x 座標。

    執行下列指令:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method GET `
    -Headers $headers `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance?relative-x-coordinate-bottom-left=le0.05" | Select-Object -Expand Content
    回應顯示系統已傳回符合搜尋查詢的 DICOM 例項:
    {
      "entry": [
        {
          "fullUrl": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/90062087-8ac2-499c-b952-a04999578bd0",
          "resource": {
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "extension": [
                  {
                    "extension": [
                      {
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ],
                        "url": "frame-index",
                        "valueDecimal": 0
                      }
                    ],
                    "url": "https://g.co/dicom-images"
                  },
                  {
                    "extension": [
                      {
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ],
                        "url": "tag-id",
                        "valueString": "00100021"
                      },
                      {
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ],
                        "url": "tag-id",
                        "valueString": "00102150"
                      }
                    ],
                    "url": "https://g.co/dicom-tags"
                  }
                ],
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                }
              }
            ],
            "id": "90062087-8ac2-499c-b952-a04999578bd0",
            "meta": {
              "lastUpdated": "LAST_UPDATED",
              "versionId": "MTY0NjY4NDg4Nzk3MDM2MTAwMA"
            },
            "recorded": "2010-11-08T08:39:24-04:00",
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ]
          },
          "search": {
            "mode": "match"
          }
        }
      ],
      "link": [
        {
          "relation": "search",
          "url": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/?relative-x-coordinate-bottom-left=le0.05"
        },
        {
          "relation": "first",
          "url": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/?relative-x-coordinate-bottom-left=le0.05"
        },
        {
          "relation": "self",
          "url": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/?relative-x-coordinate-bottom-left=le0.05"
        }
      ],
      "resourceType": "Bundle",
      "total": 1,
      "type": "searchset"
    }
    

儲存範例資料、建立來源 DICOM 自訂 FHIR 搜尋作業,以及查詢

執行這個範例之前,請建立目標資料集,其中包含空白 DICOM 儲存庫和空白 FHIR 儲存庫。FHIR 存放區必須符合相關規定

以下範例說明如何儲存在「去識別 DICOM 資料、寫入 FHIR 儲存庫,以及搜尋來源資源」中建立的三個來源資源,然後建立自訂搜尋。自訂搜尋會查詢兩個來源 DICOM 影像中其中一個的相關資訊。

  1. 儲存來源資訊資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    JSON 要求主體:

    {
      "resourceType": "Bundle",
      "type": "transaction",
      "entry": [
        {
          "request": {"method": "PUT", "url": "Provenance/operation-123"},
          "resource": {
            "resourceType": "Provenance",
            "id": "operation-123",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store"
                }
              }
            ],
            "occurredDateTime": "2010-11-08T08:30:00-04:00",
            "recorded": "2010-11-08T08:30:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "system": "https://g.co/healthcare/operation",
                    "value": "projects/my-project/locations/us-central1/datasets/my-dataset/operations/123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store"
                  }
                }
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0,
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00100021",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00102150",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:25-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1,
                        "extension": [
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00101010",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00100020",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        }
      ]
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "resourceType": "Bundle",
      "type": "transaction",
      "entry": [
        {
          "request": {"method": "PUT", "url": "Provenance/operation-123"},
          "resource": {
            "resourceType": "Provenance",
            "id": "operation-123",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store"
                }
              }
            ],
            "occurredDateTime": "2010-11-08T08:30:00-04:00",
            "recorded": "2010-11-08T08:30:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "system": "https://g.co/healthcare/operation",
                    "value": "projects/my-project/locations/us-central1/datasets/my-dataset/operations/123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store"
                  }
                }
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0,
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00100021",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00102150",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:25-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1,
                        "extension": [
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00101010",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00100020",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        }
      ]
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/fhir+json" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "resourceType": "Bundle",
      "type": "transaction",
      "entry": [
        {
          "request": {"method": "PUT", "url": "Provenance/operation-123"},
          "resource": {
            "resourceType": "Provenance",
            "id": "operation-123",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store"
                }
              }
            ],
            "occurredDateTime": "2010-11-08T08:30:00-04:00",
            "recorded": "2010-11-08T08:30:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "system": "https://g.co/healthcare/operation",
                    "value": "projects/my-project/locations/us-central1/datasets/my-dataset/operations/123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store"
                  }
                }
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:24-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/3"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0,
                        "extension": [
                          {
                            "url": "bottom",
                            "valueDecimal": 100
                          },
                          {
                            "url": "left",
                            "valueDecimal": 100
                          },
                          {
                            "url": "right",
                            "valueDecimal": 200
                          },
                          {
                            "url": "top",
                            "valueDecimal": 200
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.05
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.1
                          },
                          {
                            "url": "bottom",
                            "valueDecimal": 900
                          },
                          {
                            "url": "left",
                            "valueDecimal": 900
                          },
                          {
                            "url": "right",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "top",
                            "valueDecimal": 1000
                          },
                          {
                            "url": "relative-bottom",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-left",
                            "valueDecimal": 0.45
                          },
                          {
                            "url": "relative-right",
                            "valueDecimal": 0.5
                          },
                          {
                            "url": "relative-top",
                            "valueDecimal": 0.5
                          }
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00100021",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 10
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 18
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "text-original",
                            "valueString": "John Doe"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "PERSON_NAME"
                          },
                          {
                            "url": "byte-start",
                            "valueDecimal": 25
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 35
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "DATE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1900-12-31"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "DATE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00102150",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "LOCATION"
                          },
                          {
                            "url": "text-original",
                            "valueString": "US"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "LOCATION"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        },
        {
          "request": {"method": "POST", "url": "Provenance"},
          "resource": {
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ],
            "recorded": "2010-11-08T08:39:25-04:00",
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                },
                "extension": [
                  {
                    "url": "https://g.co/dicom-images",
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1,
                        "extension": [
                        ]
                      }
                    ]
                  },
                  {
                    "url": "https://g.co/dicom-tags",
                    "extension": [
                      {
                        "url": "tag-id",
                        "valueString": "00101010",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ]
                      },
                      {
                        "url": "tag-id",
                        "valueString": "00100020",
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ]
                      }
                    ]
                  }
                ]
              }
            ]
          }
        }
      ]
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/fhir+json" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir" | Select-Object -Expand Content

    您應該會收到如下的 JSON 回應:

  2. 在來源 DICOM 映像檔上建立 SearchParameter 資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    JSON 要求主體:

    {
      "resourceType": "SearchParameter",
      "url": "lookup-source-instance",
      "base": ["Provenance"],
      "code": "lookup-source-instance",
      "name": "look up the source DICOM instance",
      "type": "string",
      "expression": "Provenance.entity.what.identifier.value",
      "status": "active",
      "description": "A search on the source DICOM instance"
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "resourceType": "SearchParameter",
      "url": "lookup-source-instance",
      "base": ["Provenance"],
      "code": "lookup-source-instance",
      "name": "look up the source DICOM instance",
      "type": "string",
      "expression": "Provenance.entity.what.identifier.value",
      "status": "active",
      "description": "A search on the source DICOM instance"
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/fhir+json" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/SearchParameter"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "resourceType": "SearchParameter",
      "url": "lookup-source-instance",
      "base": ["Provenance"],
      "code": "lookup-source-instance",
      "name": "look up the source DICOM instance",
      "type": "string",
      "expression": "Provenance.entity.what.identifier.value",
      "status": "active",
      "description": "A search on the source DICOM instance"
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/fhir+json" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/SearchParameter" | Select-Object -Expand Content

    您應該會收到如下的 JSON 回應:

  3. 在 FHIR 儲存庫中啟用自訂 SearchParameter 資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    JSON 要求主體:

    {
      "canonicalUrls": [
        "lookup-source-instance"
      ]
    }
    

    如要傳送要求,請選擇以下其中一個選項:

    curl

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    cat > request.json << 'EOF'
    {
      "canonicalUrls": [
        "lookup-source-instance"
      ]
    }
    EOF

    接著,執行下列指令來傳送 REST 要求:

    curl -X POST \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    -H "Content-Type: application/fhir+json" \
    -d @request.json \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID:configureSearch"

    PowerShell

    將要求主體儲存在名為 request.json 的檔案中。在終端機中執行下列指令,即可在目前目錄中建立或覆寫此檔案:

    @'
    {
      "canonicalUrls": [
        "lookup-source-instance"
      ]
    }
    '@  | Out-File -FilePath request.json -Encoding utf8

    接著,執行下列指令來傳送 REST 要求:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method POST `
    -Headers $headers `
    -ContentType: "application/fhir+json" `
    -InFile request.json `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID:configureSearch" | Select-Object -Expand Content
    回應如下:回應會包含長時間執行作業的 ID。如果方法呼叫可能需要大量時間才能完成,系統就會傳回長時間執行的作業。請記下 OPERATION_ID 的值。您需要在下一個步驟中使用這個值。

  4. 取得作業狀態。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:資料集的位置
    • DATASET_ID:自訂搜尋作業執行的資料集
    • OPERATION_ID:自訂搜尋作業的 ID

    如要傳送要求,請選擇以下其中一個選項:

    curl

    執行下列指令:

    curl -X GET \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID"

    PowerShell

    執行下列指令:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method GET `
    -Headers $headers `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/operations/OPERATION_ID" | Select-Object -Expand Content

    APIs Explorer

    開啟方法參考頁面。系統會在頁面右側開啟 API Explorer 面板。 您可以使用這項工具來傳送要求。完成所有必填欄位,然後按一下「執行」

    您應該會收到如下的 JSON 回應:

  5. 使用來源 DICOM 圖片搜尋參數查詢來源資源。

    使用任何要求資料之前,請先替換以下項目:

    • PROJECT_ID:您的 Google Cloud 專案 ID
    • LOCATION:父資料集的位置
    • DATASET_ID:FHIR 儲存庫的父項資料集
    • OPERATION_METADATA_FHIR_STORE_ID:含有中繼資料的 FHIR 儲存庫 ID

    如要傳送要求,請選擇以下其中一個選項:

    curl


    以下範例使用 lookup-source-instance:contains=studies/1/series/2/instances/4 查詢,該查詢會傳回包含 studies/1/series/2/instances/4 在其 ID 中的執行個體相關資訊。

    執行下列指令:

    curl -X GET \
    -H "Authorization: Bearer $(gcloud auth print-access-token)" \
    "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance?lookup-source-instance:contains=studies/1/series/2/instances/4"

    PowerShell


    以下範例使用 lookup-source-instance:contains=studies/1/series/2/instances/4 查詢,該查詢會傳回包含 studies/1/series/2/instances/4 在其 ID 中的執行個體相關資訊。

    執行下列指令:

    $cred = gcloud auth print-access-token
    $headers = @{ "Authorization" = "Bearer $cred" }

    Invoke-WebRequest `
    -Method GET `
    -Headers $headers `
    -Uri "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance?lookup-source-instance:contains=studies/1/series/2/instances/4" | Select-Object -Expand Content
    回應顯示系統已傳回符合搜尋查詢的 DICOM 例項:
    {
      "entry": [
        {
          "fullUrl": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/d82007a1-6481-4793-b17c-ae152051ee9f",
          "resource": {
            "agent": [
              {
                "who": {
                  "identifier": {
                    "value": "projects/test-project/locations/us-central1/datasets/test-dataset/fhirStores/test-fhir-store/fhir/Provenance/operation-123"
                  }
                }
              }
            ],
            "entity": [
              {
                "extension": [
                  {
                    "extension": [
                      {
                        "url": "frame-index",
                        "valueDecimal": 0
                      },
                      {
                        "url": "frame-index",
                        "valueDecimal": 1
                      }
                    ],
                    "url": "https://g.co/dicom-images"
                  },
                  {
                    "extension": [
                      {
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 2
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "AGE"
                          },
                          {
                            "url": "text-original",
                            "valueString": "30"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "AGE"
                          }
                        ],
                        "url": "tag-id",
                        "valueString": "00101010"
                      },
                      {
                        "extension": [
                          {
                            "url": "byte-start",
                            "valueDecimal": 0
                          },
                          {
                            "url": "byte-end",
                            "valueDecimal": 4
                          },
                          {
                            "url": "finding-infotype",
                            "valueString": "GENERIC_ID"
                          },
                          {
                            "url": "text-original",
                            "valueString": "1234"
                          },
                          {
                            "url": "text-replaced",
                            "valueString": "GENERIC_ID"
                          }
                        ],
                        "url": "tag-id",
                        "valueString": "00100020"
                      }
                    ],
                    "url": "https://g.co/dicom-tags"
                  }
                ],
                "role": "source",
                "what": {
                  "identifier": {
                    "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/test-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                  }
                }
              }
            ],
            "id": "d82007a1-6481-4793-b17c-ae152051ee9f",
            "meta": {
              "lastUpdated": "2022-03-07T20:28:07.970361+00:00",
              "versionId": "MTY0NjY4NDg4Nzk3MDM2MTAwMA"
            },
            "recorded": "2010-11-08T08:39:25-04:00",
            "resourceType": "Provenance",
            "target": [
              {
                "identifier": {
                  "value": "https://healthcare.googleapis.com/projects/test-project/locations/us-central1/datasets/test-dataset/dicomStores/deid-dicom-store/dicomWeb/studies/1/series/2/instances/4"
                }
              }
            ]
          },
          "search": {
            "mode": "match"
          }
        }
      ],
      "link": [
        {
          "relation": "search",
          "url": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/?lookup-source-instance%3Acontains=studies%2F1%2Fseries%2F2%2Finstances%2F4"
        },
        {
          "relation": "first",
          "url": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/?lookup-source-instance%3Acontains=studies%2F1%2Fseries%2F2%2Finstances%2F4"
        },
        {
          "relation": "self",
          "url": "https://healthcare.googleapis.com/v1beta1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/OPERATION_METADATA_FHIR_STORE_ID/fhir/Provenance/?lookup-source-instance%3Acontains=studies%2F1%2Fseries%2F2%2Finstances%2F4"
        }
      ],
      "resourceType": "Bundle",
      "total": 1,
      "type": "searchset"
    }
    

匯出及查詢作業中繼資料 FHIR 儲存庫

以下範例說明如何將 FHIR 儲存庫中的去識別化作業中繼資料匯出至 BigQuery,並查詢 OCR 處理的個人健康資訊資料。產生的資料僅與 LOSSLESSANALYTICS_V2 SchemaType 相容。

  1. 將 FHIR 儲存庫中的中繼資料匯出至 BigQuery 資料集

    中繼資料會匯出至所選 BigQuery 資料集中名為 Provenance 的資料表。

  2. 前往「BigQuery」頁面

    前往 BigQuery

  3. 在「Explorer」窗格中,完成下列步驟:

    1. 選取 Google Cloud 專案。
    2. 選取匯出 DICOM 中繼資料的 BigQuery 資料集。
    3. 選取「Provenance」資料表。
  4. 按一下 「Compose new query」(編寫新查詢)

  5. 執行以下查詢:

    SELECT
      what.identifier.value AS Source,
      target[OFFSET(0)].identifier.value AS Destination,
      `left` AS `Left`,
      `right` AS `Right`,
      top AS Top,
      bottom AS Bottom,
      quote AS Quote,
      infoType AS InfoType,
      confidence AS Confidence
    FROM
      `PROJECT_ID.BIGQUERY_DATASET.Provenance`, UNNEST(entity), UNNEST(dicom_images), UNNEST(frame_index)
    LIMIT
      10
    

    更改下列內容:

    • PROJECT_ID: Google Cloud 專案的 ID
    • BIGQUERY_DATASET:從 FHIR 儲存庫匯出中繼資料的 BigQuery 資料集
  6. 按一下 「Run」

    查詢結果會以表格格式顯示去識別化 PHI 資料的中繼資料。如未指定目的地資料表,查詢工作會將輸出寫入臨時 (快取) 資料表。

配額

將去識別化作業中繼資料寫入 FHIR 儲存庫時,會在寫入作業中繼資料的專案中消耗 fhir_write_ops 配額。系統會為每個 DICOM 例項建立一個 FHIR 資源,因此去識別作業的傳輸量不得超過 FHIR 配額所允許的數量。

帳單

在操作中繼資料 FHIR 儲存庫中建立的每個來源資源,都會產生呼叫 fhir.update 的費用。fhir.update 的 API 呼叫次數可計算為:Total number of DICOM instances de-identified + 1

後續步驟